Structure and function of the global ocean microbiome

Shinichi Sunagawa; Luis Pedro Coelho; Samuel Chaffron; Jens Roat Kultima; Karine Labadie; Guillem Salazar; Bardya Djahanschiri; Georg Zeller; Daniel R. Mende; Adriana A. Alberti; Francisco M. Cornejo-Castillo; Paul I. Costea; Corinne Cruaud; Francesco d'Ovidio; Stefan Engelen; Isabel Ferrera; Josep M. Gasol; Lionel Guidi; Falk Hildebrand; Florian Kokoszka; Cyrille Lepoivre; Gipsi Lima-Mendez; Julie Poulain; Bonnie T. Poulos; Marta Royo-Llonch; Hugo Sarmento; Sara Vieira-Silva; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; (team) Tara Oceans Coordinators; Chris Bowler; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Fabrice Not; Hiroyuki Ogata; Stéphane Pesant; Sabrina Speich; Lars Stemmann; Matthew B. Sullivan; Jean Weissenbach; Patrick Wincker; Eric Karsenti; Jeroen Raes; Silvia G. Acinas; Peer Bork

doi:10.1126/science.1261359

Journal Articles Science Year : 2015

Structure and function of the global ocean microbiome

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Shinichi Sunagawa

Function : Author

European Molecular Biology Laboratory [Grenoble]

Luis Pedro Coelho

Function : Author

European Molecular Biology Laboratory [Grenoble]

Samuel Chaffron

Function : Author
PersonId : 12266
IdHAL : samuel-chaffron
ORCID : 0000-0001-5903-617X
IdRef : 224068989

Jens Roat Kultima

Function : Author

European Molecular Biology Laboratory [Grenoble]

Karine Labadie

Function : Author
PersonId : 757912
ORCID : 0000-0001-7467-8509
IdRef : 089020235

Institut de Génomique d'Evry

Guillem Salazar

Function : Author

Instituto de Fisica [Mexico]

Bardya Djahanschiri

Function : Author

Georg Zeller

Function : Author

European Molecular Biology Laboratory [Grenoble]

Daniel R. Mende

Function : Author

European Molecular Biology Laboratory [Grenoble]

Adriana A. Alberti

Function : Author
PersonId : 183113
IdHAL : adriana-alberti
ORCID : 0000-0003-3372-9423

Institut de Génomique d'Evry

Francisco M. Cornejo-Castillo

Function : Author

Paul I. Costea

Function : Author

Corinne Cruaud

Function : Author
PersonId : 768749
ORCID : 0000-0002-4752-7278

Institut de Génomique d'Evry

Francesco d'Ovidio

Function : Author
PersonId : 12019
IdHAL : francescodovidio
ORCID : 0000-0002-9664-7778
IdRef : 184536677

Processus de couplage à Petite Echelle, Ecosystèmes et Prédateurs Supérieurs

Stefan Engelen

Function : Author
PersonId : 1322751
IdHAL : sengelen

Immunobiologie Cellulaire et Moléculaire des Infections Parasitaires

Isabel Ferrera

Function : Author

Josep M. Gasol

Function : Author

Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona]

Lionel Guidi

Function : Author
PersonId : 178319
IdHAL : lionel-guidi
ORCID : 0000-0002-6669-5744
IdRef : 129258148

Laboratoire d'océanographie de Villefranche

Falk Hildebrand

Function : Author

European Molecular Biology Laboratory [Grenoble]

Florian Kokoszka

Function : Author

Cyrille Lepoivre

Function : Author

Information génomique et structurale

Gipsi Lima-Mendez

Function : Author

Julie Poulain

Function : Author
PersonId : 756903
IdHAL : julie-poulain
ORCID : 0000-0002-8744-3116
IdRef : 061407232

Institut de Génomique d'Evry

Bonnie T. Poulos

Function : Author

Marta Royo-Llonch

Function : Author

Hugo Sarmento

Function : Author
PersonId : 775752
ORCID : 0000-0001-5220-7992

Sara Vieira-Silva

Function : Author
PersonId : 775753
ORCID : 0000-0002-4616-7602

Céline Dimier

Function : Author

Marc Picheral

Function : Author
PersonId : 758224
ORCID : 0000-0001-8172-5473

Laboratoire d'océanographie de Villefranche

Sarah Searson

Function : Author

Stefanie Kandels-Lewis

Function : Author

European Molecular Biology Laboratory [Heidelberg]

(team) Tara Oceans Coordinators

Function : Author

Chris Bowler

Function : Author
PersonId : 1228231
IdHAL : chris-bowler
ORCID : 0000-0003-3835-6187
IdRef : 06874904X

Institut de biologie de l'ENS Paris

Colomban de Vargas

Function : Author
PersonId : 1196134
IdHAL : colomban-de-vargas
ORCID : 0000-0002-6476-6019
IdRef : 144372401

Evolution des Protistes et Ecosystèmes Pélagiques

Gabriel Gorsky

Function : Author
PersonId : 775404
ORCID : 0000-0002-1099-8711

Laboratoire d'océanographie de Villefranche

Nigel Grimsley

Function : Author

Biologie intégrative des organismes marins

Pascal Hingamp

Function : Author
PersonId : 8575
IdHAL : pascal-hingamp
ORCID : 0000-0002-7463-2444
IdRef : 174369948

Information génomique et structurale

Daniele Iudicone

Function : Author
PersonId : 757541
ORCID : 0000-0002-7473-394X
IdRef : 139806903

Stazione Zoologica Anton Dohrn

Olivier Jaillon

Function : Author
PersonId : 756900
IdHAL : olivier-jaillon
ORCID : 0000-0002-7237-9596
IdRef : 119733374

Génomique métabolique

Institut de Génomique d'Evry

Fabrice Not

Function : Author
PersonId : 742485
IdHAL : fabrice-not
ORCID : 0000-0002-9342-195X
IdRef : 089285824

Diversité et Interactions au sein du Plancton Océanique

Hiroyuki Ogata

Function : Author
PersonId : 755567
ORCID : 0000-0001-6594-377X

Information génomique et structurale

Stéphane Pesant

Function : Author

Pangea

Sabrina Speich

Function : Author

Lars Stemmann

Function : Author
PersonId : 762924
IdHAL : lars-stemmann
ORCID : 0000-0001-8935-4531
IdRef : 157238024

Laboratoire d'océanographie de Villefranche

Matthew B. Sullivan

Function : Author

Jean Weissenbach

Function : Author
PersonId : 911249

Génomique métabolique

Institut de Génomique d'Evry

Patrick Wincker

Function : Author
PersonId : 757160
IdHAL : patrick-wincker
ORCID : 0000-0001-7562-3454

Institut de Génomique d'Evry

Eric Karsenti

Function : Author

Institut de biologie de l'ENS Paris

Jeroen Raes

Function : Author

Rega Institute - VIB Center for the Biology of Disease, Department of Microbiology and Immunology, Bioinformatics and (eco-)systems Biology Laboratory, Louvain, Belgique

Silvia G. Acinas

Function : Author

Peer Bork

Function : Author

European Molecular Biology Laboratory [Grenoble]

Abstract

Microbes are dominant drivers of biogeochemical processes, yet drawing a global picture of functional diversity, microbial community structure, and their ecological determinants remains a grand challenge. We analyzed 7.2 terabases of metagenomic data from 243 Tara Oceans samples from 68 locations in epipelagic and mesopelagic waters across the globe to generate an ocean microbial reference gene catalog with >40 million nonredundant, mostly novel sequences from viruses, prokaryotes, and picoeukaryotes. Using 139 prokaryote-enriched samples, containing >35,000 species, we show vertical stratification with epipelagic community composition mostly driven by temperature rather than other environmental factors or geography. We identify ocean microbial core functionality and reveal that >73% of its abundance is shared with the human gut microbiome despite the physicochemical differences between these two ecosystems.

Domains

Geophysics [physics.geo-ph]

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Sunagawa_et_al_2015_preprint.pdf (2.06 Mo)

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https://hal.science/hal-01233742

Submitted on : Wednesday, April 14, 2021-5:15:02 PM

Last modification on : Friday, January 10, 2025-10:08:16 AM

Long-term archiving on : Thursday, July 15, 2021-7:13:44 PM

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hal-01233742 , version 1 (14-04-2021)

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HAL Id : hal-01233742 , version 1
DOI : 10.1126/science.1261359

Cite

Shinichi Sunagawa, Luis Pedro Coelho, Samuel Chaffron, Jens Roat Kultima, Karine Labadie, et al.. Structure and function of the global ocean microbiome. Science, 2015, 348 (6237), pp.1261359. ⟨10.1126/science.1261359⟩. ⟨hal-01233742⟩

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Structure and function of the global ocean microbiome

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